Download fastq files using GSE ID
Let's say you want to obtain fastq files for the accession number GSE151038. Following are the steps to do so -
- Search for the accession GSE151038 on GEO.
- Click on 'Query Datasets for GSE151038'.
- Select samples under 'Entry type'.
- Click on 'SRA Run Selector' under any sample.
- Locate the expriment ID. In this case, it is SRX8380465.
- Go to EMBL-ENA and search for SRX8380465 in the search bar located at the top right corner.
- Click on SRX8380465 under 'Experiment'.
- Click on the study accession. In this case, it is PRJNA634473.
- You may click on download all to download all fastq files. You may also click on TSV next to 'Download report' to obtain the download links for individual fastq files.